Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion system outer membrane ring subunit sctc | F126LOC_RS09555 | Not Available | Positive | 2143675 - 2145744 | 75624.9 |
| hrpt family type iii secretion system protein | F126LOC_RS09560 | Not Available | Positive | 2145772 - 2145963 | 7022.42 |
| type iii secretion protein | F126LOC_RS09565 | Not Available | Positive | 2145956 - 2146303 | 12825.6 |
| harpin hrpz family protein | F126LOC_RS09570 | Not Available | Positive | 2146448 - 2147518 | 35631.4 |
| type vi secretion system tip protein vgrg | F126LOC_RS09575 | Not Available | Positive | 2148015 - 2150042 | 73709.0 |
| duf4123 domain-containing protein | F126LOC_RS09580 | Not Available | Positive | 2150039 - 2150836 | 29631.5 |
| t6ss phospholipase effector tle1-like catalytic domain-containing protein | F126LOC_RS09585 | Not Available | Positive | 2150836 - 2152830 | 73186.6 |
| duf2931 family protein | F126LOC_RS09590 | Not Available | Positive | 2152827 - 2153540 | 26660.1 |
| hypothetical protein | F126LOC_RS22310 | Not Available | Positive | 2153592 - 2153885 | 10629.8 |
| duf2931 family protein | F126LOC_RS22315 | Not Available | Positive | 2153891 - 2154295 | 15621.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
