Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator transcription factor | F126LOC_RS09505 | Not Available | Positive | 2136075 - 2136716 | 23399.8 |
| sigma 54-interacting transcriptional regulator | F126LOC_RS09510 | Not Available | Positive | 2137095 - 2138165 | 39773.2 |
| eal domain-containing protein | F126LOC_RS09515 | Not Available | Negative | 2138264 - 2139859 | 60026.5 |
| hypothetical protein | F126LOC_RS09520 | Not Available | Positive | 2140206 - 2140412 | 6923.14 |
| esci/ysci/hrpb family type iii secretion system inner rod protein | F126LOC_RS09525 | Not Available | Positive | 2140482 - 2140853 | 13069.2 |
| type iii secretion system inner membrane ring lipoprotein sctj | F126LOC_RS09530 | Not Available | Positive | 2140860 - 2141627 | 28024.1 |
| type iii secretion protein | F126LOC_RS09535 | Not Available | Positive | 2141624 - 2142253 | 23491.1 |
| type iii secretion system stator protein sctl | F126LOC_RS09540 | Not Available | Positive | 2142291 - 2142890 | 22342.7 |
| type iii secretion protein hrpf | F126LOC_RS09545 | Not Available | Positive | 2143037 - 2143261 | 8039.34 |
| type iii secretion system chaperone | F126LOC_RS09550 | Not Available | Positive | 2143248 - 2143682 | 15805.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
