Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion system export apparatus subunit sctr | F126LOC_RS09455 | Not Available | Negative | 2125059 - 2125712 | 23993.4 |
| type iii secretion system cytoplasmic ring protein sctq | F126LOC_RS09460 | Not Available | Negative | 2125709 - 2126881 | 42498.7 |
| type iii secretion system hrpp c-terminal domain-containing protein | F126LOC_RS09465 | Not Available | Negative | 2126878 - 2127411 | 19848.9 |
| type iii secretion protein | F126LOC_RS09470 | Not Available | Negative | 2127408 - 2127845 | 17263.3 |
| type iii secretion system atpase sctn | F126LOC_RS09475 | Not Available | Negative | 2127835 - 2129202 | 49179.9 |
| fha domain-containing protein | F126LOC_RS09480 | Not Available | Negative | 2129202 - 2130137 | 34151.8 |
| type iii secretion system export apparatus subunit sctv | F126LOC_RS09485 | Not Available | Negative | 2130147 - 2132249 | 77575.6 |
| type iii secretion system gatekeeper subunit sctw | F126LOC_RS09490 | Not Available | Negative | 2132246 - 2133454 | 44178.5 |
| rna polymerase sigma factor | F126LOC_RS09495 | Not Available | Positive | 2133782 - 2134327 | 20892.1 |
| pas domain s-box protein | F126LOC_RS09500 | Not Available | Positive | 2134569 - 2136038 | 55855.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
