Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methionine abc transporter permease | F126LOC_RS09405 | Not Available | Positive | 2116566 - 2117225 | 23600.7 |
| o-succinylbenzoate synthase | F126LOC_RS09410 | Not Available | Positive | 2117267 - 2118379 | 41374.0 |
| metq/nlpa family abc transporter substrate-binding protein | F126LOC_RS09415 | Not Available | Positive | 2118668 - 2119495 | 30254.6 |
| type ii toxin-antitoxin system rele/pare family toxin | F126LOC_RS09420 | Not Available | Positive | 2119574 - 2119963 | 14438.3 |
| helix-turn-helix domain-containing protein | F126LOC_RS09425 | Not Available | Positive | 2119956 - 2120276 | 11627.1 |
| m20 family metallopeptidase | F126LOC_RS09430 | Not Available | Negative | 2120393 - 2121811 | 52085.8 |
| lysr family transcriptional regulator | F126LOC_RS09435 | Not Available | Positive | 2121954 - 2122880 | 34393.9 |
| type iii secretion system export apparatus subunit sctu | F126LOC_RS09440 | Not Available | Negative | 2122891 - 2123970 | 40554.9 |
| type iii secretion system export apparatus subunit sctt | F126LOC_RS09445 | Not Available | Negative | 2123981 - 2124784 | 29269.2 |
| type iii secretion system export apparatus subunit scts | F126LOC_RS09450 | Not Available | Negative | 2124791 - 2125051 | 9229.07 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
