Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad-dependent succinate-semialdehyde dehydrogenase | F126LOC_RS09355 | Not Available | Positive | 2103012 - 2104478 | 52672.4 |
| abc transporter substrate-binding protein | F126LOC_RS09360 | Not Available | Positive | 2104821 - 2105900 | 39544.0 |
| abc transporter permease | F126LOC_RS09365 | Not Available | Positive | 2105943 - 2107211 | 46800.8 |
| abc transporter permease | F126LOC_RS09370 | Not Available | Positive | 2107239 - 2108057 | 29498.2 |
| sdr family nad(p)-dependent oxidoreductase | F126LOC_RS09375 | Not Available | Positive | 2108560 - 2109294 | 26343.5 |
| phosphotransferase | F126LOC_RS09380 | Not Available | Positive | 2109287 - 2110411 | 41728.9 |
| aspartate aminotransferase family protein | F126LOC_RS09385 | Not Available | Positive | 2110408 - 2111709 | 47277.5 |
| methyl-accepting chemotaxis protein | F126LOC_RS09390 | Not Available | Negative | 2111744 - 2113231 | 53178.4 |
| acid phosphatase | F126LOC_RS09395 | Not Available | Negative | 2113712 - 2115001 | 47138.1 |
| methionine abc transporter atp-binding protein | F126LOC_RS09400 | Not Available | Positive | 2115551 - 2116573 | 37104.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
