Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glsb/yeaq/ymge family stress response membrane protein | F126LOC_RS09305 | Not Available | Positive | 2088870 - 2089118 | 8723.12 |
| aminotransferase class iii-fold pyridoxal phosphate-dependent enzyme | F126LOC_RS09310 | Not Available | Negative | 2089288 - 2090037 | 27398.9 |
| nad-dependent epimerase/dehydratase family protein | F126LOC_RS09315 | Not Available | Negative | 2090265 - 2091293 | 38229.2 |
| degt/dnrj/eryc1/strs family aminotransferase | F126LOC_RS09320 | Not Available | Negative | 2091290 - 2094361 | 112396.0 |
| duf1501 domain-containing protein | F126LOC_RS09325 | Not Available | Negative | 2094394 - 2095593 | 44097.8 |
| duf1800 domain-containing protein | F126LOC_RS09330 | Not Available | Negative | 2095610 - 2097571 | 73647.9 |
| hypothetical protein | F126LOC_RS09335 | Not Available | Negative | 2097684 - 2098436 | 28291.7 |
| abc transporter atp-binding protein | F126LOC_RS09340 | Not Available | Negative | 2098802 - 2099896 | 41196.8 |
| plp-dependent aminotransferase family protein | F126LOC_RS09345 | Not Available | Negative | 2100089 - 2101582 | 55021.5 |
| 4-aminobutyrate--2-oxoglutarate transaminase | F126LOC_RS09350 | Not Available | Positive | 2101736 - 2103001 | 45181.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
