Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| eama family transporter | F126LOC_RS09255 | Not Available | Negative | 2079895 - 2080767 | 31143.0 |
| marr family winged helix-turn-helix transcriptional regulator | F126LOC_RS09260 | Not Available | Positive | 2080830 - 2081357 | 19719.6 |
| osmc family protein | F126LOC_RS09265 | Not Available | Positive | 2081361 - 2081837 | 17553.6 |
| dsd1 family plp-dependent enzyme | F126LOC_RS09270 | Not Available | Negative | 2081940 - 2083082 | 41381.4 |
| ornithine cyclodeaminase family protein | F126LOC_RS09275 | Not Available | Negative | 2083082 - 2084020 | 32839.9 |
| threo-3-hydroxy-l-aspartate ammonia-lyase | F126LOC_RS09280 | Not Available | Negative | 2084031 - 2085005 | 34788.4 |
| transcriptional regulator | F126LOC_RS09285 | Not Available | Positive | 2085285 - 2085908 | 22349.7 |
| translesion error-prone dna polymerase v autoproteolytic subunit | F126LOC_RS09290 | Not Available | Positive | 2086082 - 2086501 | 15112.1 |
| translesion error-prone dna polymerase v subunit umuc | F126LOC_RS09295 | Not Available | Positive | 2086501 - 2087766 | 47172.1 |
| excinuclease cho | F126LOC_RS09300 | Not Available | Positive | 2087766 - 2088608 | 31607.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
