Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| immunity 26/phosphotriesterase hoca family protein | F126LOC_RS09155 | Not Available | Positive | 2053111 - 2054313 | 45617.1 |
| eal domain-containing protein | F126LOC_RS09160 | Not Available | Positive | 2054641 - 2056197 | 58697.2 |
| ycei family protein | F126LOC_RS09165 | Not Available | Positive | 2056435 - 2057010 | 20839.9 |
| anti-sigma factor family protein | F126LOC_RS09170 | Not Available | Negative | 2057060 - 2057863 | 29741.5 |
| sigma-70 family rna polymerase sigma factor | F126LOC_RS09175 | Not Available | Negative | 2057860 - 2058336 | 17938.5 |
| dihydromonapterin reductase | F126LOC_RS09180 | Not Available | Negative | 2058406 - 2059128 | 26352.7 |
| hypothetical protein | F126LOC_RS09185 | Not Available | Positive | 2059392 - 2059808 | 15649.0 |
| c4-dicarboxylic acid transporter daua | F126LOC_RS09190 | Not Available | Negative | 2059847 - 2061550 | 60402.5 |
| sodium-potassium/proton antiporter chaa | F126LOC_RS09195 | Not Available | Negative | 2061714 - 2062814 | 39283.9 |
| siderophore-interacting protein | F126LOC_RS09200 | Not Available | Negative | 2063142 - 2063945 | 30089.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
