Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ynbe family lipoprotein | F126LOC_RS09105 | Not Available | Positive | 2040185 - 2040418 | 8348.11 |
| fmn-dependent nadh-azoreductase | F126LOC_RS09110 | Not Available | Negative | 2040462 - 2041067 | 21856.2 |
| atp-dependent rna helicase hrpa | F126LOC_RS09115 | Not Available | Positive | 2041372 - 2045259 | 147988.0 |
| ecsc family protein | F126LOC_RS09120 | Not Available | Negative | 2045276 - 2046115 | 29584.9 |
| eal domain-containing protein | F126LOC_RS09125 | Not Available | Negative | 2046163 - 2047941 | 67104.9 |
| trypsin-like serine peptidase | F126LOC_RS09130 | Not Available | Negative | 2048409 - 2049257 | 30789.7 |
| hypothetical protein | F126LOC_RS09135 | Not Available | Negative | 2049491 - 2049793 | 10597.6 |
| acid resistance repetitive basic protein asr | F126LOC_RS09140 | Not Available | Negative | 2050199 - 2050663 | 15710.5 |
| two-component system sensor histidine kinase rstb | F126LOC_RS09145 | Not Available | Negative | 2050842 - 2052155 | 49761.7 |
| two-component system response regulator rsta | F126LOC_RS09150 | Not Available | Negative | 2052152 - 2052889 | 27441.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
