Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna 2-thiocytidine(32) synthetase ttca | F126LOC_RS09055 | Not Available | Negative | 2026906 - 2027841 | 35460.7 |
| hypothetical protein | F126LOC_RS09060 | Not Available | Positive | 2028569 - 2029723 | 45377.9 |
| duf6979 family protein | F126LOC_RS09065 | Not Available | Positive | 2030069 - 2030470 | 14546.8 |
| hypothetical protein | F126LOC_RS09070 | Not Available | Positive | 2031396 - 2031548 | 5872.79 |
| 2fe-2s iron-sulfur cluster-binding protein | F126LOC_RS09075 | Not Available | Positive | 2031583 - 2031921 | 12414.4 |
| duf333 domain-containing protein | F126LOC_RS09080 | Not Available | Positive | 2032297 - 2032587 | 9754.6 |
| 2-hydroxyacid dehydrogenase | F126LOC_RS09085 | Not Available | Negative | 2032621 - 2033613 | 36399.8 |
| methyl-accepting chemotaxis protein | F126LOC_RS09090 | Not Available | Negative | 2033733 - 2035286 | 56996.2 |
| methyl-accepting chemotaxis protein | F126LOC_RS09095 | Not Available | Negative | 2035652 - 2037205 | 56748.3 |
| ydbh family protein | F126LOC_RS09100 | Not Available | Positive | 2037578 - 2040169 | 96302.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
