Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator tyrr | F126LOC_RS09005 | Not Available | Positive | 2013416 - 2014984 | 58493.6 |
| dead/deah box helicase | F126LOC_RS09010 | Not Available | Positive | 2015037 - 2017175 | 79475.7 |
| dna-processing protein dpra | F126LOC_RS09015 | Not Available | Positive | 2017172 - 2018479 | 47233.3 |
| calcium-binding protein | F126LOC_RS09020 | Not Available | Negative | 2018541 - 2020655 | 77319.3 |
| hypothetical protein | F126LOC_RS09025 | Not Available | Negative | 2020682 - 2021464 | 29606.4 |
| thiol peroxidase | F126LOC_RS09030 | Not Available | Negative | 2021824 - 2022327 | 17670.0 |
| murein tripeptide amidase mpaa | F126LOC_RS09035 | Not Available | Negative | 2022416 - 2023135 | 25852.6 |
| peptide abc transporter substrate-binding protein | F126LOC_RS09040 | Not Available | Positive | 2023301 - 2024917 | 60168.0 |
| zinc transporter zntb | F126LOC_RS09045 | Not Available | Positive | 2025041 - 2026024 | 36533.4 |
| hypothetical protein | F126LOC_RS09050 | Not Available | Positive | 2026608 - 2026784 | 6279.35 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
