Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| envelope stress response membrane protein pspb | F126LOC_RS08955 | Not Available | Positive | 1996869 - 1997093 | 8870.8 |
| envelope stress response membrane protein pspc | F126LOC_RS08960 | Not Available | Positive | 1997093 - 1997458 | 13833.0 |
| hypothetical protein | F126LOC_RS08965 | Not Available | Negative | 1997551 - 1998105 | 20922.9 |
| hypothetical protein | F126LOC_RS08970 | Not Available | Negative | 1998249 - 1998731 | 17778.2 |
| hemagglutinin repeat-containing protein | F126LOC_RS08975 | Not Available | Negative | 1998744 - 2006543 | 270238.0 |
| toxin-activating lysine-acyltransferase | F126LOC_RS08980 | Not Available | Negative | 2006571 - 2007086 | 19656.6 |
| shlb/fhac/hecb family hemolysin secretion/activation protein | F126LOC_RS08985 | Not Available | Negative | 2007098 - 2008840 | 65307.8 |
| ycjx family protein | F126LOC_RS08990 | Not Available | Positive | 2009138 - 2010535 | 52767.6 |
| ycjf family protein | F126LOC_RS08995 | Not Available | Positive | 2010532 - 2011575 | 38609.7 |
| m20/m25/m40 family metallo-hydrolase | F126LOC_RS09000 | Not Available | Positive | 2011735 - 2013279 | 55166.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
