Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putrescine export abc transporter atp-binding protein sapf | F126LOC_RS08905 | Not Available | Negative | 1986486 - 1987301 | 30517.1 |
| putrescine export abc transporter atp-binding protein sapd | F126LOC_RS08910 | Not Available | Negative | 1987301 - 1988293 | 37330.2 |
| putrescine export abc transporter permease sapc | F126LOC_RS08915 | Not Available | Negative | 1988310 - 1989200 | 32155.8 |
| putrescine export abc transporter permease sapb | F126LOC_RS08920 | Not Available | Negative | 1989187 - 1990152 | 35342.3 |
| abc transporter substrate-binding protein sapa | F126LOC_RS08925 | Not Available | Negative | 1990149 - 1991837 | 63614.5 |
| antitoxin xre/mbca/pars toxin-binding domain-containing protein | F126LOC_RS08930 | Not Available | Positive | 1992009 - 1992449 | 16164.5 |
| res family nad+ phosphorylase | F126LOC_RS08935 | Not Available | Positive | 1992446 - 1992934 | 18255.0 |
| cellulase family glycosylhydrolase | F126LOC_RS08940 | Not Available | Positive | 1993319 - 1994836 | 55007.8 |
| phage shock protein operon transcriptional activator | F126LOC_RS08945 | Not Available | Negative | 1994908 - 1995897 | 37138.9 |
| phage shock protein pspa | F126LOC_RS08950 | Not Available | Positive | 1996123 - 1996788 | 25162.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
