Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar phosphate isomerase/epimerase family protein | F126LOC_RS08805 | Not Available | Positive | 1959288 - 1960286 | 37236.2 |
| sugar-binding transcriptional regulator | F126LOC_RS08810 | Not Available | Negative | 1960373 - 1961317 | 33737.7 |
| lapa family protein | F126LOC_RS08815 | Not Available | Positive | 1961569 - 1961874 | 11413.2 |
| lipopolysaccharide assembly protein lapb | F126LOC_RS08820 | Not Available | Positive | 1961887 - 1963056 | 44700.4 |
| orotidine-5'-phosphate decarboxylase | F126LOC_RS08825 | Not Available | Positive | 1963240 - 1963983 | 26525.8 |
| stress response translation initiation inhibitor ycih | F126LOC_RS08830 | Not Available | Positive | 1963980 - 1964315 | 12003.7 |
| osmotically-inducible lipoprotein osmb | F126LOC_RS08835 | Not Available | Negative | 1964572 - 1964787 | 6857.45 |
| l-ribulose-5-phosphate 4-epimerase | F126LOC_RS08840 | Not Available | Positive | 1965122 - 1965817 | 25765.8 |
| carbon starvation csta family protein | F126LOC_RS08845 | Not Available | Negative | 1966017 - 1968080 | 74242.6 |
| aldo/keto reductase | F126LOC_RS08850 | Not Available | Negative | 1968308 - 1969225 | 33807.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
