Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | F126LOC_RS08755 | Not Available | Positive | 1947783 - 1949417 | 61572.6 |
| gtp cyclohydrolase ii | F126LOC_RS08760 | Not Available | Negative | 1949488 - 1950081 | 21765.3 |
| phosphatidylglycerophosphatase b | F126LOC_RS08765 | Not Available | Positive | 1950373 - 1951149 | 29952.8 |
| d-ribose abc transporter substrate-binding protein | F126LOC_RS08770 | Not Available | Positive | 1951494 - 1952435 | 33887.3 |
| duf2291 family protein | F126LOC_RS08775 | Not Available | Positive | 1952480 - 1953112 | 22416.0 |
| sugar abc transporter atp-binding protein | F126LOC_RS08780 | Not Available | Positive | 1953112 - 1954665 | 56071.1 |
| abc transporter permease | F126LOC_RS08785 | Not Available | Positive | 1954667 - 1955764 | 38124.4 |
| transketolase | F126LOC_RS08790 | Not Available | Positive | 1955928 - 1956758 | 30076.8 |
| transketolase family protein | F126LOC_RS08795 | Not Available | Positive | 1956751 - 1957695 | 33323.1 |
| fggy-family carbohydrate kinase | F126LOC_RS08800 | Not Available | Positive | 1957698 - 1959188 | 53156.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
