Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anhydro-n-acetylmuramic acid kinase | F126LOC_RS08705 | Not Available | Positive | 1936262 - 1937374 | 39249.6 |
| mlic family protein | F126LOC_RS08710 | Not Available | Positive | 1937472 - 1937789 | 11587.0 |
| pyridoxamine 5'-phosphate oxidase | F126LOC_RS08715 | Not Available | Positive | 1937897 - 1938580 | 26353.5 |
| tyrosine--trna ligase | F126LOC_RS08720 | Not Available | Positive | 1938816 - 1940093 | 47401.2 |
| pyridoxal kinase pdxy | F126LOC_RS08725 | Not Available | Positive | 1940178 - 1941038 | 31085.7 |
| glutathione transferase gsta | F126LOC_RS08730 | Not Available | Negative | 1941077 - 1941685 | 23252.4 |
| dicarboxylate/amino acid:cation symporter | F126LOC_RS08735 | Not Available | Positive | 1942550 - 1943854 | 46571.2 |
| aconitate hydratase acna | F126LOC_RS08740 | Not Available | Positive | 1944151 - 1946823 | 97956.9 |
| putative t6ss immunity periplasmic lipoprotein | F126LOC_RS08745 | Not Available | Negative | 1946894 - 1947325 | 16104.2 |
| hypothetical protein | F126LOC_RS08750 | Not Available | Negative | 1947328 - 1947498 | 6751.05 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
