Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative urea abc transporter substrate-binding protein | F126LOC_RS08605 | Not Available | Positive | 1916820 - 1917878 | 37670.3 |
| abc transporter permease | F126LOC_RS08610 | Not Available | Positive | 1917901 - 1918716 | 30305.6 |
| abc transporter atp-binding protein | F126LOC_RS08615 | Not Available | Positive | 1918713 - 1919504 | 29565.0 |
| urea amidolyase associated protein uaap1 | F126LOC_RS08620 | Not Available | Positive | 1919518 - 1920264 | 27631.7 |
| urea amidolyase associated protein uaap2 | F126LOC_RS08625 | Not Available | Positive | 1920276 - 1920911 | 23585.0 |
| hypothetical protein | F126LOC_RS08630 | Not Available | Positive | 1920902 - 1921039 | 5317.36 |
| urea carboxylase | F126LOC_RS08635 | Not Available | Positive | 1921163 - 1924768 | 130523.0 |
| Trna-val | Not Available | Not Available | Positive | 1925493 - 1925569 | Not Available |
| mate family efflux transporter | F126LOC_RS08645 | Not Available | Negative | 1925925 - 1927298 | 49381.2 |
| riboflavin synthase | F126LOC_RS08650 | Not Available | Positive | 1927547 - 1928182 | 23020.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
