Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | F126LOC_RS00075 | Not Available | Positive | 17154 - 18704 | 56235.1 |
| dihydrodipicolinate synthase family protein | F126LOC_RS00080 | Not Available | Positive | 18776 - 19660 | 31900.6 |
| nucleoside hydrolase | F126LOC_RS00085 | Not Available | Positive | 19764 - 20717 | 34440.7 |
| nucleoside hydrolase | F126LOC_RS00090 | Not Available | Positive | 20719 - 21696 | 35215.4 |
| abc transporter permease | F126LOC_RS00095 | Not Available | Positive | 21696 - 22673 | 35626.1 |
| abc transporter permease | F126LOC_RS00100 | Not Available | Positive | 22670 - 23578 | 32748.3 |
| abc transporter atp-binding protein | F126LOC_RS00105 | Not Available | Positive | 23618 - 25417 | 66395.7 |
| helix-turn-helix domain-containing protein | F126LOC_RS00110 | Not Available | Negative | 25454 - 25753 | 11048.8 |
| type ii toxin-antitoxin system rele/pare family toxin | F126LOC_RS00115 | Not Available | Negative | 25740 - 26126 | 14719.5 |
| d-galactonate utilization transcriptional regulator dgor | F126LOC_RS00120 | Not Available | Positive | 26448 - 27146 | 26409.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
