Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | F126LOC_RS08555 | Not Available | Positive | 1907054 - 1907941 | 31986.8 |
| nyn domain-containing protein | F126LOC_RS08560 | Not Available | Negative | 1907991 - 1908743 | 28236.0 |
| Trna-val | Not Available | Not Available | Positive | 1909062 - 1909138 | Not Available |
| dmt family transporter | F126LOC_RS08570 | Not Available | Positive | 1909483 - 1909797 | 10974.1 |
| had-iib family hydrolase | F126LOC_RS08575 | Not Available | Positive | 1910176 - 1910967 | 29133.8 |
| deor/glpr family dna-binding transcription regulator | F126LOC_RS08580 | Not Available | Negative | 1911015 - 1911788 | 28145.8 |
| metallophosphoesterase | F126LOC_RS08585 | Not Available | Positive | 1911868 - 1913133 | 46291.8 |
| catalase/peroxidase hpi | F126LOC_RS08590 | Not Available | Positive | 1913462 - 1915636 | 80589.5 |
| duf3861 domain-containing protein | F126LOC_RS08595 | Not Available | Negative | 1915707 - 1915970 | 10273.6 |
| marr family winged helix-turn-helix transcriptional regulator | F126LOC_RS08600 | Not Available | Positive | 1916052 - 1916465 | 15615.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
