Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heme abc transporter permease | F126LOC_RS08455 | Not Available | Positive | 1887615 - 1888355 | 27432.6 |
| heme exporter protein ccmd | F126LOC_RS08460 | Not Available | Positive | 1888352 - 1888573 | 8402.21 |
| cytochrome c maturation protein ccme | F126LOC_RS08465 | Not Available | Positive | 1888570 - 1889052 | 17445.0 |
| heme lyase ccmf/nrfe family subunit | F126LOC_RS08470 | Not Available | Positive | 1889049 - 1891004 | 71823.0 |
| dsbe family thiol:disulfide interchange protein | F126LOC_RS08475 | Not Available | Positive | 1891001 - 1891558 | 20699.2 |
| cytochrome c-type biogenesis protein ccmh | F126LOC_RS08480 | Not Available | Positive | 1891555 - 1892013 | 17677.5 |
| c-type cytochrome biogenesis protein ccmi | F126LOC_RS08485 | Not Available | Positive | 1892010 - 1892879 | 32283.9 |
| is110 family transposase | F126LOC_RS08490 | Not Available | Negative | 1893587 - 1894573 | 36132.3 |
| cytochrome c-type protein napc | F126LOC_RS08495 | Not Available | Negative | 1894895 - 1895497 | 22910.8 |
| nitrate reductase cytochrome c-type subunit | F126LOC_RS08500 | Not Available | Negative | 1895506 - 1895958 | 16359.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
