Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoside hydrolase | F126LOC_RS08405 | Not Available | Positive | 1877798 - 1878811 | 37554.2 |
| ammonia-forming nitrite reductase cytochrome c552 subunit | F126LOC_RS08410 | Not Available | Positive | 1879315 - 1880688 | 50930.0 |
| cytochrome c nitrite reductase pentaheme subunit | F126LOC_RS08415 | Not Available | Positive | 1880737 - 1881306 | 21281.4 |
| cytochrome c nitrite reductase fe-s protein | F126LOC_RS08420 | Not Available | Positive | 1881303 - 1881974 | 24694.9 |
| cytochrome c nitrite reductase subunit nrfd | F126LOC_RS08425 | Not Available | Positive | 1881971 - 1882933 | 35504.8 |
| heme lyase ccmf/nrfe family subunit | F126LOC_RS08430 | Not Available | Positive | 1882955 - 1884829 | 68895.6 |
| heme lyase nrfefg subunit nrff | F126LOC_RS08435 | Not Available | Positive | 1884822 - 1885223 | 15072.6 |
| heme lyase nrfefg subunit nrfg | F126LOC_RS08440 | Not Available | Positive | 1885220 - 1886080 | 31753.5 |
| cytochrome c biogenesis heme-transporting atpase ccma | F126LOC_RS08445 | Not Available | Positive | 1886271 - 1886903 | 23207.2 |
| heme exporter protein ccmb | F126LOC_RS08450 | Not Available | Positive | 1886891 - 1887547 | 23312.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
