Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cysteine desulfurase sufs | F126LOC_RS08355 | Not Available | Positive | 1864048 - 1865271 | 44308.1 |
| cysteine desulfuration protein sufe | F126LOC_RS08360 | Not Available | Positive | 1865305 - 1865721 | 15482.5 |
| l,d-transpeptidase family protein | F126LOC_RS08365 | Not Available | Positive | 1866197 - 1867219 | 36648.3 |
| major outer membrane lipoprotein | F126LOC_RS08370 | Not Available | Negative | 1867398 - 1867634 | 8401.95 |
| pyruvate kinase pykf | F126LOC_RS08375 | Not Available | Negative | 1867948 - 1869360 | 50430.0 |
| bglg family transcription antiterminator lict | F126LOC_RS08380 | Not Available | Positive | 1870003 - 1870866 | 33133.2 |
| pts beta-glucoside transporter subunit iiabc | F126LOC_RS08385 | Not Available | Positive | 1871179 - 1873080 | 67261.0 |
| glycoside hydrolase family 1 protein | F126LOC_RS08390 | Not Available | Positive | 1873116 - 1874510 | 53284.0 |
| carbohydrate porin | F126LOC_RS08395 | Not Available | Positive | 1874769 - 1876409 | 60734.9 |
| alpha/beta hydrolase | F126LOC_RS08400 | Not Available | Positive | 1876496 - 1877686 | 43781.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
