Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fad:protein fmn transferase apbe | F126LOC_RS08305 | Not Available | Negative | 1852698 - 1853744 | 37928.4 |
| Ncrna_class:antisense_rna | Not Available | Not Available | Positive | 1853836 - 1853947 | Not Available |
| ai-2e family transporter ydik | F126LOC_RS08315 | Not Available | Negative | 1854249 - 1855358 | 40275.9 |
| fad-binding and (fe-s)-binding domain-containing protein | F126LOC_RS08320 | Not Available | Positive | 1855654 - 1858707 | 112890.0 |
| 1,4-dihydroxy-2-naphthoyl-coa hydrolase | F126LOC_RS08325 | Not Available | Positive | 1858707 - 1859123 | 15334.5 |
| hypothetical protein | F126LOC_RS08330 | Not Available | Negative | 1859172 - 1859573 | 15789.9 |
| fe-s cluster assembly scaffold sufa | F126LOC_RS08335 | Not Available | Positive | 1860000 - 1860371 | 13624.2 |
| fe-s cluster assembly protein sufb | F126LOC_RS08340 | Not Available | Positive | 1860385 - 1861884 | 55416.9 |
| fe-s cluster assembly atpase sufc | F126LOC_RS08345 | Not Available | Positive | 1861981 - 1862727 | 27713.1 |
| fe-s cluster assembly protein sufd | F126LOC_RS08350 | Not Available | Positive | 1862702 - 1864048 | 49271.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
