Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylglucosamine kinase | F126LOC_RS08205 | Not Available | Positive | 1831408 - 1832322 | 33216.3 |
| sir2 family nad+-dependent deacetylase | F126LOC_RS08210 | Not Available | Positive | 1832334 - 1833164 | 31447.6 |
| crp/fnr family transcriptional regulator | F126LOC_RS08215 | Not Available | Negative | 1833647 - 1834363 | 27643.3 |
| cupin domain-containing protein | F126LOC_RS08220 | Not Available | Positive | 1834480 - 1834821 | 12041.7 |
| class i sam-dependent methyltransferase | F126LOC_RS08225 | Not Available | Positive | 1834882 - 1835646 | 28454.7 |
| vitamin b12 abc transporter permease btuc | F126LOC_RS08230 | Not Available | Positive | 1835782 - 1836819 | 37710.8 |
| glutathione peroxidase | F126LOC_RS08235 | Not Available | Positive | 1836886 - 1837437 | 20750.6 |
| vitamin b12 abc transporter atp-binding protein btud | F126LOC_RS08240 | Not Available | Positive | 1837438 - 1838214 | 28238.3 |
| c40 family peptidase | F126LOC_RS08245 | Not Available | Positive | 1838362 - 1838835 | 17885.3 |
| lipoate--protein ligase a | F126LOC_RS08250 | Not Available | Positive | 1838875 - 1839891 | 37671.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
