Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine zipper 2tm domain-containing protein | F126LOC_RS08155 | Not Available | Positive | 1817832 - 1818371 | 18888.5 |
| mfs transporter | F126LOC_RS08160 | Not Available | Negative | 1818471 - 1819664 | 40598.2 |
| mfs transporter | F126LOC_RS08165 | Not Available | Negative | 1819706 - 1820914 | 41687.2 |
| tetr/acrr family transcriptional regulator | F126LOC_RS08170 | Not Available | Positive | 1821050 - 1821640 | 21683.9 |
| molecular chaperone | F126LOC_RS08175 | Not Available | Negative | 1821692 - 1823044 | 50049.0 |
| is110 family transposase | F126LOC_RS08180 | Not Available | Negative | 1823272 - 1824258 | 36132.3 |
| transcription-repair coupling factor | F126LOC_RS08185 | Not Available | Negative | 1824582 - 1828034 | 130588.0 |
| lipoprotein-releasing abc transporter permease subunit lolc | F126LOC_RS08190 | Not Available | Positive | 1828177 - 1829379 | 43109.2 |
| lipoprotein-releasing abc transporter atp-binding protein lold | F126LOC_RS08195 | Not Available | Positive | 1829372 - 1830079 | 25652.8 |
| lipoprotein-releasing abc transporter permease subunit lole | F126LOC_RS08200 | Not Available | Positive | 1830076 - 1831323 | 44987.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
