Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pts glucose transporter subunit iibc | F126LOC_RS08105 | Not Available | Positive | 1807625 - 1809058 | 50504.1 |
| helix-turn-helix transcriptional regulator | F126LOC_RS08110 | Not Available | Negative | 1809119 - 1809916 | 30689.6 |
| mfs transporter | F126LOC_RS08115 | Not Available | Positive | 1810040 - 1811494 | 50708.7 |
| purine nucleoside phosphoramidase | F126LOC_RS08120 | Not Available | Positive | 1811723 - 1812073 | 12812.6 |
| ycfl family protein | F126LOC_RS08125 | Not Available | Positive | 1812158 - 1812538 | 13807.5 |
| penicillin-binding protein activator lpob | F126LOC_RS08130 | Not Available | Positive | 1812560 - 1813141 | 20223.4 |
| thiamine kinase | F126LOC_RS08135 | Not Available | Positive | 1813122 - 1814006 | 34607.1 |
| beta-n-acetylhexosaminidase | F126LOC_RS08140 | Not Available | Positive | 1814097 - 1815125 | 37820.1 |
| alpha/beta hydrolase ycfp | F126LOC_RS08145 | Not Available | Positive | 1815154 - 1815696 | 20896.1 |
| nad(p)/fad-dependent oxidoreductase | F126LOC_RS08150 | Not Available | Positive | 1816063 - 1817367 | 47326.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
