Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pepsy-associated tm helix domain-containing protein | F126LOC_RS07955 | Not Available | Negative | 1776258 - 1777781 | 55961.8 |
| duf2946 domain-containing protein | F126LOC_RS07960 | Not Available | Negative | 1777884 - 1778384 | 17709.0 |
| glucan biosynthesis protein g | F126LOC_RS07965 | Not Available | Positive | 1778828 - 1780330 | 56390.3 |
| glucans biosynthesis glucosyltransferase mdoh | F126LOC_RS07970 | Not Available | Positive | 1780323 - 1782887 | 97182.8 |
| kdo(2)-lipid iv(a) acyltransferase | F126LOC_RS07975 | Not Available | Negative | 1783005 - 1783925 | 35387.4 |
| nadh:flavin oxidoreductase/nadh oxidase | F126LOC_RS07980 | Not Available | Negative | 1784187 - 1785281 | 39436.1 |
| rhodanese-related sulfurtransferase | F126LOC_RS07985 | Not Available | Positive | 1785498 - 1786565 | 40423.3 |
| ycei family protein | F126LOC_RS07990 | Not Available | Negative | 1786639 - 1787214 | 21064.6 |
| cytochrome b | F126LOC_RS07995 | Not Available | Negative | 1787244 - 1787798 | 20543.4 |
| biofilm formation regulator bsss | F126LOC_RS08000 | Not Available | Negative | 1788258 - 1788512 | 9625.28 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
