Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | F126LOC_RS07755 | Not Available | Positive | 1738842 - 1739810 | 36623.2 |
| gnat family n-acetyltransferase | F126LOC_RS07760 | Not Available | Positive | 1739798 - 1740250 | 16860.4 |
| class i sam-dependent methyltransferase | F126LOC_RS07765 | Not Available | Positive | 1740247 - 1740987 | 28099.3 |
| hypothetical protein | F126LOC_RS07770 | Not Available | Positive | 1741058 - 1742476 | 53904.3 |
| rna polymerase sigma factor flia | F126LOC_RS07775 | Not Available | Positive | 1743070 - 1743792 | 27520.6 |
| flagella biosynthesis regulatory protein fliz | F126LOC_RS07780 | Not Available | Positive | 1743997 - 1744512 | 20586.6 |
| phosphate starvation-inducible protein phoh | F126LOC_RS07785 | Not Available | Positive | 1745044 - 1745832 | 29340.5 |
| Trna-ser | Not Available | Not Available | Positive | 1745918 - 1746007 | Not Available |
| rpib/laca/lacb family sugar-phosphate isomerase | F126LOC_RS07795 | Not Available | Negative | 1746227 - 1746865 | 22568.0 |
| choline transporter | F126LOC_RS07800 | Not Available | Negative | 1747082 - 1749115 | 76111.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
