Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar basal-body ms-ring/collar protein flif | F126LOC_RS07705 | Not Available | Negative | 1726021 - 1727745 | 62067.5 |
| flagellar hook-basal body complex protein flie | F126LOC_RS07710 | Not Available | Positive | 1728006 - 1728320 | 11181.6 |
| flagella biosynthesis regulatory protein flit | F126LOC_RS07715 | Not Available | Negative | 1728599 - 1728979 | 14212.2 |
| flagellar export chaperone flis | F126LOC_RS07720 | Not Available | Negative | 1728979 - 1729389 | 14996.2 |
| flagellar filament capping protein flid | F126LOC_RS07725 | Not Available | Negative | 1729420 - 1730844 | 50792.9 |
| flagellin | F126LOC_RS07730 | Not Available | Positive | 1731114 - 1731986 | 30071.1 |
| methyltransferase regulatory domain-containing protein | F126LOC_RS07735 | Not Available | Positive | 1732212 - 1735631 | 127585.0 |
| degt/dnrj/eryc1/strs family aminotransferase | F126LOC_RS07740 | Not Available | Positive | 1735947 - 1737059 | 41520.8 |
| wbqc family protein | F126LOC_RS07745 | Not Available | Positive | 1737179 - 1737880 | 27093.7 |
| glycosylase | F126LOC_RS07750 | Not Available | Positive | 1737883 - 1738842 | 36923.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
