Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Ci repressor protein | F126LOC_RS18840 | Not Available | Positive | 4302600 - 4303187 | 21955.7 |
| hypothetical protein | F126LOC_RS18845 | Not Available | Positive | 4303205 - 4304305 | 41671.7 |
| stas-like domain-containing protein | F126LOC_RS18850 | Not Available | Positive | 4304310 - 4304624 | 11600.7 |
| hypothetical protein | F126LOC_RS18855 | Not Available | Positive | 4304626 - 4305090 | 17431.1 |
| Integrase | F126LOC_RS18860 | Not Available | Positive | 4305090 - 4306106 | 39576.5 |
| Attr | Not Available | Not Available | Positive | 4306226 - 4306257 | Not Available |
| chromosomal replication initiator protein dnaa | F126LOC_RS00005 | Not Available | Positive | 1 - 1398 | 52789.1 |
| dna polymerase iii subunit beta | F126LOC_RS00010 | Not Available | Positive | 1403 - 2503 | 40579.1 |
| dna replication/repair protein recf | F126LOC_RS00015 | Not Available | Positive | 2553 - 3638 | 40709.8 |
| dna topoisomerase (atp-hydrolyzing) subunit b | F126LOC_RS00020 | Not Available | Positive | 3657 - 6074 | 89814.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
