Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-lys | Not Available | Not Available | Positive | 1674538 - 1674613 | Not Available |
| hypothetical protein | F126LOC_RS07410 | Not Available | Positive | 1675079 - 1675366 | 10953.5 |
| duf2594 family protein | F126LOC_RS07415 | Not Available | Negative | 1675459 - 1675683 | 8092.75 |
| uvry/sira/gaca family response regulator transcription factor | F126LOC_RS07420 | Not Available | Positive | 1676327 - 1676983 | 24005.4 |
| excinuclease abc subunit uvrc | F126LOC_RS07425 | Not Available | Positive | 1676976 - 1678808 | 68012.9 |
| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | F126LOC_RS07430 | Not Available | Positive | 1678867 - 1679415 | 20796.0 |
| Trna-gly | Not Available | Not Available | Positive | 1679555 - 1679630 | Not Available |
| Trna-cys | Not Available | Not Available | Positive | 1679682 - 1679755 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 1679764 - 1679850 | Not Available |
| phage major tail tube protein | F126LOC_RS07450 | Not Available | Positive | 1680028 - 1680213 | 6471.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
