Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux transporter outer membrane subunit | F126LOC_RS07355 | Not Available | Negative | 1661832 - 1663301 | 51475.7 |
| tetr/acrr family transcriptional regulator | F126LOC_RS07360 | Not Available | Positive | 1663389 - 1664003 | 22992.7 |
| efflux rnd transporter periplasmic adaptor subunit | F126LOC_RS07365 | Not Available | Positive | 1664080 - 1665189 | 38838.4 |
| efflux rnd transporter permease subunit | F126LOC_RS07370 | Not Available | Positive | 1665186 - 1668275 | 112538.0 |
| multidrug effflux mfs transporter | F126LOC_RS07375 | Not Available | Positive | 1668391 - 1669608 | 41600.9 |
| dienelactone hydrolase family protein | F126LOC_RS07380 | Not Available | Negative | 1669683 - 1670855 | 42396.3 |
| Trna-asn | Not Available | Not Available | Positive | 1671232 - 1671307 | Not Available |
| alpha/beta hydrolase | F126LOC_RS07390 | Not Available | Positive | 1671687 - 1671956 | 9923.06 |
| anti-adapter protein irap | F126LOC_RS07395 | Not Available | Positive | 1672350 - 1672616 | 9854.95 |
| d-serine/d-alanine/glycine transporter | F126LOC_RS07400 | Not Available | Negative | 1672788 - 1674200 | 51601.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
