Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | F126LOC_RS07205 | Not Available | Negative | 1624483 - 1625436 | 35787.9 |
| taud/tfda family dioxygenase | F126LOC_RS07210 | Not Available | Negative | 1625440 - 1626060 | 23516.9 |
| is30 family transposase | F126LOC_RS07215 | Not Available | Negative | 1626330 - 1627490 | 44479.4 |
| mipa/ompv family protein | F126LOC_RS07220 | Not Available | Negative | 1627894 - 1628730 | 29652.8 |
| response regulator transcription factor | F126LOC_RS07225 | Not Available | Positive | 1628934 - 1629611 | 24983.7 |
| sensor histidine kinase | F126LOC_RS07230 | Not Available | Positive | 1629611 - 1630999 | 52197.4 |
| smp-30/gluconolactonase/lre family protein | F126LOC_RS07235 | Not Available | Negative | 1631090 - 1631956 | 31574.0 |
| dmt family transporter | F126LOC_RS07240 | Not Available | Negative | 1632039 - 1632506 | 16069.3 |
| amidohydrolase family protein | F126LOC_RS07245 | Not Available | Negative | 1632518 - 1633915 | 50627.1 |
| lysr family transcriptional regulator | F126LOC_RS07250 | Not Available | Positive | 1634048 - 1634932 | 33037.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
