Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh:flavin oxidoreductase/nadh oxidase | F126LOC_RS07155 | Not Available | Positive | 1613522 - 1614610 | 39814.9 |
| helix-turn-helix domain-containing protein | F126LOC_RS07160 | Not Available | Negative | 1614657 - 1615064 | 15416.8 |
| efflux rnd transporter permease subunit | F126LOC_RS07165 | Not Available | Negative | 1615115 - 1618213 | 112109.0 |
| efflux rnd transporter periplasmic adaptor subunit | F126LOC_RS07170 | Not Available | Negative | 1618244 - 1619371 | 39837.4 |
| response regulator | F126LOC_RS07175 | Not Available | Positive | 1619467 - 1620201 | 27837.6 |
| atp-binding protein | F126LOC_RS07180 | Not Available | Positive | 1620203 - 1621255 | 38505.8 |
| tetr/acrr family transcriptional regulator | F126LOC_RS07185 | Not Available | Positive | 1621493 - 1622062 | 21200.5 |
| duf1348 family protein | F126LOC_RS07190 | Not Available | Positive | 1622121 - 1622597 | 18965.2 |
| type 1 glutamine amidotransferase | F126LOC_RS07195 | Not Available | Negative | 1622720 - 1623445 | 26767.8 |
| arac family transcriptional regulator | F126LOC_RS07200 | Not Available | Positive | 1623561 - 1624328 | 28875.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
