Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Phage portal protein | F126LOC_RS18790 | Not Available | Positive | 4295840 - 4296859 | 38009.0 |
| Hypothetical protein | F126LOC_RS18795 | Not Available | Positive | 4296868 - 4297188 | 11830.4 |
| Replication protein a | F126LOC_RS18800 | Not Available | Negative | 4297487 - 4299520 | 77740.2 |
| hypothetical protein | F126LOC_RS18805 | Not Available | Positive | 4299561 - 4299857 | 11219.1 |
| Methyl-directed repair dna adenine methylase | F126LOC_RS18810 | Not Available | Negative | 4299923 - 4300840 | 33943.5 |
| Hypothetical protein | F126LOC_RS18815 | Not Available | Negative | 4300837 - 4301073 | 9053.91 |
| hypothetical protein | F126LOC_RS18820 | Not Available | Negative | 4301148 - 4301492 | 13336.7 |
| phage filamentation protein fil family protein | F126LOC_RS18825 | Not Available | Negative | 4301495 - 4301698 | 7544.26 |
| Regulatory protein cii | F126LOC_RS18830 | Not Available | Negative | 4301710 - 4302213 | 17842.4 |
| Regulator | F126LOC_RS18835 | Not Available | Negative | 4302234 - 4302464 | 8403.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
