Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tail fiber assembly protein | F126LOC_RS07055 | Not Available | Negative | 1586755 - 1587372 | 22947.7 |
| phage tail protein | F126LOC_RS07060 | Not Available | Negative | 1587372 - 1589264 | 66974.7 |
| nitrate regulatory protein | F126LOC_RS07065 | Not Available | Positive | 1589484 - 1590773 | 48461.3 |
| cmpa/nrta family abc transporter substrate-binding protein | F126LOC_RS07070 | Not Available | Positive | 1591444 - 1592703 | 45661.5 |
| nitrate abc transporter permease | F126LOC_RS07075 | Not Available | Positive | 1592716 - 1593630 | 33235.4 |
| abc transporter atp-binding protein | F126LOC_RS07080 | Not Available | Positive | 1593641 - 1594435 | 29625.0 |
| nitrite reductase large subunit nirb | F126LOC_RS07085 | Not Available | Positive | 1594455 - 1598642 | 151190.0 |
| nitrate reductase | F126LOC_RS07090 | Not Available | Positive | 1598639 - 1601347 | 98491.3 |
| uroporphyrinogen-iii c-methyltransferase | F126LOC_RS07095 | Not Available | Positive | 1601373 - 1602206 | 29916.4 |
| rpn family recombination-promoting nuclease/putative transposase | F126LOC_RS07100 | Not Available | Positive | 1602362 - 1603318 | 36455.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
