Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar phosphatase | F126LOC_RS06860 | Not Available | Positive | 1539631 - 1540287 | 23526.2 |
| slc13 family permease | F126LOC_RS06865 | Not Available | Positive | 1540484 - 1542316 | 66410.7 |
| 5'-deoxynucleotidase | F126LOC_RS06870 | Not Available | Negative | 1542346 - 1542945 | 22908.6 |
| pyridoxal phosphate-dependent aminotransferase | F126LOC_RS06875 | Not Available | Negative | 1543088 - 1544302 | 45490.9 |
| transcriptional regulator lrha | F126LOC_RS06880 | Not Available | Positive | 1544804 - 1545754 | 34812.1 |
| nadh-quinone oxidoreductase subunit a | F126LOC_RS06885 | Not Available | Positive | 1546432 - 1546872 | 16157.0 |
| nuob/complex i 20 kda subunit family protein | F126LOC_RS06890 | Not Available | Positive | 1546890 - 1547564 | 25607.8 |
| nadh-quinone oxidoreductase subunit c/d | F126LOC_RS06895 | Not Available | Positive | 1547663 - 1549462 | 68829.6 |
| nadh-quinone oxidoreductase subunit nuoe | F126LOC_RS06900 | Not Available | Positive | 1549465 - 1550010 | 19997.4 |
| nadh-quinone oxidoreductase subunit nuof | F126LOC_RS06905 | Not Available | Positive | 1550007 - 1551356 | 49291.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
