Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr01777 family oxidoreductase | F126LOC_RS06810 | Not Available | Negative | 1529800 - 1530705 | 33004.9 |
| dihydroneopterin triphosphate 2'-epimerase | F126LOC_RS06815 | Not Available | Negative | 1530725 - 1531096 | 14405.2 |
| gsh-dependent disulfide bond oxidoreductase | F126LOC_RS06820 | Not Available | Negative | 1531222 - 1531848 | 24017.4 |
| phosphodiesterase | F126LOC_RS06825 | Not Available | Positive | 1532111 - 1532662 | 20444.6 |
| nudix hydrolase yfcd | F126LOC_RS06830 | Not Available | Positive | 1532786 - 1533454 | 24746.4 |
| duf817 domain-containing protein | F126LOC_RS06835 | Not Available | Negative | 1533526 - 1534386 | 33178.9 |
| phosphate acetyltransferase | F126LOC_RS06840 | Not Available | Negative | 1534632 - 1536770 | 77101.9 |
| acetate kinase | F126LOC_RS06845 | Not Available | Negative | 1536850 - 1538052 | 43587.3 |
| terminus macrodomain insulation protein yfbv | F126LOC_RS06850 | Not Available | Positive | 1538494 - 1538949 | 17084.9 |
| yfbu family protein | F126LOC_RS06855 | Not Available | Positive | 1539115 - 1539609 | 19484.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
