Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyl-coa carboxylase, carboxyltransferase subunit beta | F126LOC_RS06760 | Not Available | Positive | 1519944 - 1520861 | 33606.8 |
| bifunctional tetrahydrofolate synthase/dihydrofolate synthase | F126LOC_RS06765 | Not Available | Positive | 1520951 - 1522219 | 45831.6 |
| cell division protein dedd | F126LOC_RS06770 | Not Available | Positive | 1522209 - 1522955 | 26110.1 |
| colicin v production protein | F126LOC_RS06775 | Not Available | Positive | 1523271 - 1523771 | 18704.9 |
| amidophosphoribosyltransferase | F126LOC_RS06780 | Not Available | Positive | 1523793 - 1525310 | 56690.5 |
| ubix family flavin prenyltransferase | F126LOC_RS06785 | Not Available | Positive | 1525526 - 1526098 | 20849.6 |
| lysine/arginine/ornithine abc transporter substrate-binding protein | F126LOC_RS06790 | Not Available | Positive | 1526513 - 1527292 | 28047.5 |
| histidine abc transporter permease hisq | F126LOC_RS06795 | Not Available | Positive | 1527433 - 1528122 | 24920.0 |
| abc transporter permease | F126LOC_RS06800 | Not Available | Positive | 1528115 - 1528831 | 26951.3 |
| histidine abc transporter atp-binding protein hisp | F126LOC_RS06805 | Not Available | Positive | 1528848 - 1529621 | 28722.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
