Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| elongation factor p hydroxylase | F126LOC_RS06710 | Not Available | Positive | 1508744 - 1509289 | 20783.2 |
| yfcl family protein | F126LOC_RS06715 | Not Available | Positive | 1509323 - 1509607 | 10509.3 |
| bifunctional trna (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase mnmd/fad-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase mnmc | F126LOC_RS06720 | Not Available | Negative | 1509696 - 1511723 | 74718.5 |
| beta-ketoacyl-acp synthase i | F126LOC_RS06725 | Not Available | Positive | 1511897 - 1513114 | 42622.7 |
| flagella biosynthesis regulator flk | F126LOC_RS06730 | Not Available | Negative | 1513228 - 1514484 | 45009.7 |
| dmt family transporter | F126LOC_RS06735 | Not Available | Negative | 1514590 - 1515483 | 32405.3 |
| 4-phosphoerythronate dehydrogenase pdxb | F126LOC_RS06740 | Not Available | Positive | 1515751 - 1516887 | 41132.2 |
| aspartate-semialdehyde dehydrogenase | F126LOC_RS06745 | Not Available | Positive | 1517001 - 1518011 | 35728.2 |
| trna pseudouridine(38-40) synthase trua | F126LOC_RS06750 | Not Available | Positive | 1518011 - 1518862 | 31583.6 |
| deda family protein | F126LOC_RS06755 | Not Available | Positive | 1519057 - 1519719 | 24536.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
