Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fimbria/pilus outer membrane usher protein | F126LOC_RS06660 | Not Available | Negative | 1498017 - 1500383 | 86178.6 |
| molecular chaperone | F126LOC_RS06665 | Not Available | Negative | 1500442 - 1501218 | 29238.5 |
| spore coat u domain-containing protein | F126LOC_RS06670 | Not Available | Negative | 1501254 - 1501790 | 18374.8 |
| spore coat u domain-containing protein | F126LOC_RS06675 | Not Available | Negative | 1501989 - 1502537 | 18592.0 |
| phosphohistidine phosphatase sixa | F126LOC_RS06680 | Not Available | Positive | 1503676 - 1504158 | 17276.8 |
| endonuclease smrb | F126LOC_RS06685 | Not Available | Negative | 1504246 - 1504788 | 20390.4 |
| 50s ribosomal protein l3 n(5)-glutamine methyltransferase | F126LOC_RS06690 | Not Available | Positive | 1504960 - 1505892 | 35222.7 |
| chorismate synthase | F126LOC_RS06695 | Not Available | Positive | 1505968 - 1507053 | 39156.7 |
| penicillin-insensitive murein endopeptidase | F126LOC_RS06700 | Not Available | Positive | 1507061 - 1507906 | 31122.4 |
| sulfite exporter taue/safe family protein | F126LOC_RS06705 | Not Available | Positive | 1507916 - 1508716 | 28269.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
