Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| malate dehydrogenase (quinone) | F126LOC_RS06610 | Not Available | Positive | 1486325 - 1487908 | 58055.5 |
| lysr family transcriptional regulator | F126LOC_RS06615 | Not Available | Negative | 1487981 - 1488877 | 33434.1 |
| sdr family oxidoreductase | F126LOC_RS06620 | Not Available | Positive | 1489020 - 1489772 | 26757.8 |
| long-chain fatty acid transporter fadl | F126LOC_RS06625 | Not Available | Negative | 1489949 - 1491232 | 46512.9 |
| yfcz/yiis family protein | F126LOC_RS06630 | Not Available | Positive | 1491620 - 1491916 | 10439.3 |
| class i sam-dependent methyltransferase | F126LOC_RS06635 | Not Available | Negative | 1492010 - 1492774 | 28808.9 |
| marr family winged helix-turn-helix transcriptional regulator | F126LOC_RS06640 | Not Available | Negative | 1492767 - 1493252 | 17896.5 |
| acetyl-coa c-acyltransferase fadi | F126LOC_RS06645 | Not Available | Positive | 1493468 - 1494781 | 46351.0 |
| fatty acid oxidation complex subunit alpha fadj | F126LOC_RS06650 | Not Available | Positive | 1494778 - 1496994 | 80593.5 |
| spore coat u domain-containing protein | F126LOC_RS06655 | Not Available | Negative | 1496987 - 1498012 | 36682.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
