Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Holin | F126LOC_RS18740 | Not Available | Negative | 4287617 - 4287910 | 10167.7 |
| Putative tail tube protein | F126LOC_RS18745 | Not Available | Negative | 4287920 - 4288375 | 16248.3 |
| Tail sheath | F126LOC_RS18750 | Not Available | Negative | 4288372 - 4289514 | 40682.5 |
| Putative tail completion protein | F126LOC_RS18755 | Not Available | Negative | 4289517 - 4290221 | 26517.8 |
| Tail protein | F126LOC_RS18760 | Not Available | Negative | 4290218 - 4290718 | 18554.0 |
| Head completion/stabilization protein | F126LOC_RS18765 | Not Available | Negative | 4290715 - 4291167 | 16200.4 |
| Putative terminase endonuclease subunit | F126LOC_RS18770 | Not Available | Negative | 4291263 - 4291964 | 26806.8 |
| Major capsid protein, p2 family | F126LOC_RS18775 | Not Available | Negative | 4291966 - 4293006 | 38662.5 |
| Gpo family capsid scaffolding protein | F126LOC_RS18780 | Not Available | Negative | 4293083 - 4293904 | 30811.9 |
| Putative terminase atpase subunit | F126LOC_RS18785 | Not Available | Positive | 4294068 - 4295843 | 67767.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
