Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| molybdate abc transporter substrate-binding protein | F126LOC_RS06515 | Not Available | Positive | 1470246 - 1470998 | 27516.3 |
| atp-dependent rna helicase dbpa | F126LOC_RS06520 | Not Available | Positive | 1471101 - 1472483 | 50404.0 |
| alpha/beta hydrolase | F126LOC_RS06525 | Not Available | Positive | 1472544 - 1473116 | 21803.8 |
| hypothetical protein | F126LOC_RS06530 | Not Available | Negative | 1473221 - 1473760 | 18905.9 |
| hypothetical protein | F126LOC_RS06535 | Not Available | Positive | 1474285 - 1474551 | 9801.52 |
| hypothetical protein | F126LOC_RS06540 | Not Available | Positive | 1474678 - 1475439 | 28411.4 |
| npp1 family protein | F126LOC_RS06545 | Not Available | Positive | 1475672 - 1476463 | 28204.0 |
| hypothetical protein | F126LOC_RS06550 | Not Available | Negative | 1476638 - 1476823 | 7017.49 |
| hypothetical protein | F126LOC_RS06555 | Not Available | Negative | 1477030 - 1477962 | 34801.7 |
| alpha/beta hydrolase | F126LOC_RS22300 | Not Available | Negative | 1478163 - 1478258 | 3808.33 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
