Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii secretion system minor pseudopilin gspk | F126LOC_RS06465 | Not Available | Positive | 1461010 - 1461996 | 36618.0 |
| type ii secretion system protein gspl | F126LOC_RS06470 | Not Available | Positive | 1461993 - 1463270 | 47708.6 |
| type ii secretion system protein gspm | F126LOC_RS06475 | Not Available | Positive | 1463267 - 1463761 | 18758.6 |
| type ii secretion system protein n | F126LOC_RS06480 | Not Available | Positive | 1463751 - 1464497 | 26845.4 |
| prepilin peptidase | F126LOC_RS06485 | Not Available | Positive | 1464606 - 1465451 | 31468.2 |
| membrane protein ypdk | F126LOC_RS06490 | Not Available | Negative | 1465612 - 1465686 | 2909.8 |
| llm class flavin-dependent oxidoreductase | F126LOC_RS06495 | Not Available | Negative | 1466044 - 1467069 | 37351.0 |
| abc transporter substrate-binding protein | F126LOC_RS06500 | Not Available | Positive | 1467379 - 1468443 | 39847.1 |
| feccd family abc transporter permease | F126LOC_RS06505 | Not Available | Positive | 1468440 - 1469477 | 37147.0 |
| abc transporter atp-binding protein | F126LOC_RS06510 | Not Available | Positive | 1469479 - 1470249 | 27873.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
