Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide lyase family 1 protein | F126LOC_RS06415 | Not Available | Positive | 1449454 - 1451022 | 56840.8 |
| glycosyl hydrolase family 28 protein | F126LOC_RS06420 | Not Available | Positive | 1451162 - 1453141 | 71947.1 |
| type ii secretion system protein gspc | F126LOC_RS06425 | Not Available | Positive | 1453192 - 1454055 | 31025.8 |
| type ii secretion system secretin gspd | F126LOC_RS06430 | Not Available | Positive | 1454144 - 1456096 | 70181.6 |
| type ii secretion system atpase gspe | F126LOC_RS06435 | Not Available | Positive | 1456093 - 1457589 | 55279.0 |
| type ii secretion system inner membrane protein gspf | F126LOC_RS06440 | Not Available | Positive | 1457591 - 1458817 | 45185.8 |
| type ii secretion system major pseudopilin gspg | F126LOC_RS06445 | Not Available | Positive | 1458850 - 1459320 | 17403.8 |
| type ii secretion system minor pseudopilin gsph | F126LOC_RS06450 | Not Available | Positive | 1459435 - 1460001 | 21342.7 |
| type ii secretion system minor pseudopilin gspi | F126LOC_RS06455 | Not Available | Positive | 1459998 - 1460363 | 13813.5 |
| type ii secretion system minor pseudopilin gspj | F126LOC_RS06460 | Not Available | Positive | 1460363 - 1461013 | 24896.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
