Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | F126LOC_RS06365 | Not Available | Negative | 1436213 - 1438243 | 76622.2 |
| hypothetical protein | F126LOC_RS06370 | Not Available | Negative | 1438257 - 1439204 | 37272.2 |
| dna methyltransferase | F126LOC_RS06375 | Not Available | Negative | 1439197 - 1440594 | 52736.7 |
| Trna-arg | Not Available | Not Available | Positive | 1441307 - 1441383 | Not Available |
| duf3772 domain-containing protein | F126LOC_RS06385 | Not Available | Positive | 1441780 - 1444233 | 88270.8 |
| d-amino-acid transaminase | F126LOC_RS06390 | Not Available | Negative | 1444314 - 1445174 | 32074.3 |
| n-acetyl-d-glu racemase dgca | F126LOC_RS06395 | Not Available | Negative | 1445217 - 1446197 | 35755.8 |
| alanine transaminase | F126LOC_RS06400 | Not Available | Positive | 1446581 - 1447822 | 45900.3 |
| type ii secretion system pilot lipoprotein gsps | F126LOC_RS06405 | Not Available | Positive | 1447944 - 1448357 | 14508.2 |
| type ii secretion system assembly factor gspb | F126LOC_RS06410 | Not Available | Negative | 1448354 - 1448923 | 20380.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
