Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional udp-4-amino-4-deoxy-l-arabinose formyltransferase/udp-glucuronic acid oxidase arna | F126LOC_RS06265 | Not Available | Positive | 1415076 - 1417109 | 75939.8 |
| 4-deoxy-4-formamido-l-arabinose- phosphoundecaprenol deformylase | F126LOC_RS06270 | Not Available | Positive | 1417106 - 1417999 | 33508.9 |
| lipid iv(a) 4-amino-4-deoxy-l-arabinosyltransferase | F126LOC_RS06275 | Not Available | Positive | 1418017 - 1419687 | 62490.5 |
| 4-amino-4-deoxy-l-arabinose-phosphoundecaprenol flippase subunit arne | F126LOC_RS06280 | Not Available | Positive | 1419684 - 1420025 | 12749.3 |
| 4-amino-4-deoxy-l-arabinose-phosphoundecaprenol flippase subunit arnf | F126LOC_RS06285 | Not Available | Positive | 1420025 - 1420417 | 14337.3 |
| abc transporter atp-binding protein | F126LOC_RS06290 | Not Available | Negative | 1420449 - 1421504 | 37548.0 |
| abc transporter permease | F126LOC_RS06295 | Not Available | Negative | 1421507 - 1423084 | 56803.4 |
| iron abc transporter substrate-binding protein | F126LOC_RS06300 | Not Available | Negative | 1423239 - 1424255 | 36382.9 |
| pts lactose/cellobiose transporter subunit iia | F126LOC_RS06305 | Not Available | Positive | 1424756 - 1425079 | 12155.9 |
| cupin domain-containing protein | F126LOC_RS06310 | Not Available | Negative | 1425181 - 1425621 | 15643.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
