Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-2,3-diacylglucosamine diphosphatase | F126LOC_RS06215 | Not Available | Negative | 1404392 - 1405114 | 27491.3 |
| peptidylprolyl isomerase b | F126LOC_RS06220 | Not Available | Negative | 1405125 - 1405619 | 18105.3 |
| doxx family protein | F126LOC_RS06225 | Not Available | Positive | 1406041 - 1406472 | 15343.3 |
| cysteine--trna ligase | F126LOC_RS06230 | Not Available | Positive | 1406742 - 1408127 | 52365.9 |
| ribosome-associated protein ybcj | F126LOC_RS06235 | Not Available | Negative | 1408219 - 1408431 | 7528.97 |
| bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold | F126LOC_RS06240 | Not Available | Negative | 1408464 - 1409327 | 31009.6 |
| sensor domain-containing diguanylate cyclase | F126LOC_RS06245 | Not Available | Negative | 1409466 - 1411013 | 57715.5 |
| nucleotide sugar dehydrogenase | F126LOC_RS06250 | Not Available | Positive | 1411568 - 1412734 | 43856.5 |
| udp-4-amino-4-deoxy-l-arabinose aminotransferase | F126LOC_RS06255 | Not Available | Positive | 1412955 - 1414103 | 42036.8 |
| undecaprenyl-phosphate 4-deoxy-4-formamido-l-arabinose transferase | F126LOC_RS06260 | Not Available | Positive | 1414096 - 1415079 | 36477.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
