Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exopolyphosphatase | F126LOC_RS06165 | Not Available | Negative | 1390090 - 1391625 | 58306.5 |
| polyphosphate kinase 1 | F126LOC_RS06170 | Not Available | Negative | 1391625 - 1393697 | 80237.6 |
| abc transporter permease subunit | F126LOC_RS06175 | Not Available | Positive | 1393915 - 1396095 | 80154.2 |
| phosphate abc transporter permease psta | F126LOC_RS06180 | Not Available | Positive | 1396092 - 1397738 | 60987.1 |
| phosphate abc transporter atp-binding protein pstb | F126LOC_RS06185 | Not Available | Positive | 1397754 - 1398569 | 30731.9 |
| helix-turn-helix domain-containing protein | F126LOC_RS06190 | Not Available | Positive | 1398701 - 1399138 | 16287.7 |
| l-serine ammonia-lyase | F126LOC_RS06195 | Not Available | Negative | 1399395 - 1400762 | 49596.9 |
| haaap family serine/threonine permease | F126LOC_RS06200 | Not Available | Negative | 1400830 - 1402119 | 46863.9 |
| 5-(carboxyamino)imidazole ribonucleotide synthase | F126LOC_RS06205 | Not Available | Negative | 1402637 - 1403707 | 39417.3 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | F126LOC_RS06210 | Not Available | Negative | 1403704 - 1404213 | 17517.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
